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Merck
CN

A9539

Agarose

BioReagent, Molecular Biology, low EEO

Synonym(s):

3,6-Anhydro-α-L-galacto-β-D-galactan, Agarose LE

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About This Item

CAS Number:
UNSPSC Code:
41105317
PubChem Substance ID:
EC Number:
232-731-8
NACRES:
NA.25
MDL number:
Technical Service
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biological source

algae (marine)

Quality Level

grade

Molecular Biology

product line

BioReagent

form

powder

technique(s)

electrophoresis: suitable

impurities

≤10% moisture content

EEO

0.09-0.13

transition temp

gel point 36 °C ±1.5 °C (1.5% gel)

gel strength

≥1200 g/cm2 (1% gel)

anion traces

sulfate (SO42-): ≤0.15%

suitability

suitable for electrophoresis, suitable for molecular biology

foreign activity

DNase, RNase, none detected

SMILES string

O1[C@H]([C@@H]([C@H]([C@H]([C@H]1CO)O)O[C@@H]4O[C@@H]5[C@H]([C@@H](OC5)[C@@H]4O)O[C@@H]6O[C@@H]([C@@H]([C@@H]([C@H]6O)O)O)CO)O)O[C@H]2[C@H]3OC[C@@H]2O[C@H]([C@H]3O)O

InChI

1S/C24H38O19/c25-1-5-9(27)11(29)12(30)22(38-5)41-17-8-4-36-20(17)15(33)24(40-8)43-18-10(28)6(2-26)39-23(14(18)32)42-16-7-3-35-19(16)13(31)21(34)37-7/h5-34H,1-4H2/t5-,6-,7+,8+,9+,10+,11+,12-,13+,14-,15+,16-,17-,18+,19+,20+,21-,22+,23+,24+/m1/s1

InChI key

MJQHZNBUODTQTK-WKGBVCLCSA-N

General description

Agarose is a natural polysaccharide isolated from the seaweed genera Gelidium and Gracilaria. Structurally, it is a linear polymer consisting of alternating D-galactose and 3,6-anhydro-L-galactose units.

Application

Agarose has been used:

  • in gel electrophoresis to analyze the integrity of DNA
  • to prepare hydrocolloid gels and study the structural influence of gels on the release of carbohydrates
  • in gel electrophoresis to analyze the integrity of RNA
  • it is suitable for protein applications such as Ouchterlony and radial immunodiffusion (RID)

Biochem/physiol Actions

Agarose serves as a gelling agent and is extensively used in molecular biology research to separate and analyze nucleic acids by gel electrophoresis or blotting (Northern or Southern). During gelation, agarose polymers combine non-covalently resulting in a network of bundles whose pore sizes decide a gel′s molecular sieving properties. The type and the concentration of agarose influence the rate of migration of a DNA molecule through a gel. However, agarose also has attractive features that bring about a strong interest in its usage in biological applications. It is known to mimic the extracellular matrix which makes it an excellent biomaterial for tissue engineering applications. Due to its great water uptake capability agarose is suitable for cell-encapsulation. Agarose allows regulated permeation for oxygen and nutrients and is useful in cell growth, differentiation, and proliferation. Agarose is used in controlled/localized drug delivery and regenerative medicine, such as neurogenesis, angiogenesis, spermatogenesis, cartilage formation, bone regeneration, wound healing, and artificial pancreas.

Features and Benefits

  • Biocompatible
  • Agarose gels have larger pore sizes than polyacrylamide gels at low concentrations
  • Unlike polyacrylamide, the consistency of the gels is more solid (but also less elastic)
  • Possesses low ethidium bromide and SYBR Green background staining

Analysis Note

The following is a list of properties associated with our agaroses:
Sulfate content - used as an indicator of purity, since sulfate is the major ionic group present.
Gel strength - the force that must be applied to a gel to cause it to fracture.
Gel point - the temperature at which an aqueous agarose solution forms a gel as it cools. Agarose solutions exhibit hysteresis in the liquid-to-gel transition - that is, their gel point is not the same as their melting temperature.
Electroendosmosis (EEO) - a movement of liquid through the gel. Anionic groups in an agarose gel are affixed to the matrix and cannot move, but dissociable counter cations can migrate toward the cathode in the matrix, giving rise to EEO. Since electrophoretic movement of biopolymers is usually toward the anode, EEO can disrupt separations because of internal convection.

Other Notes

For additional information on our range of Biochemicals, please complete this form.


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Storage Class

11 - Combustible Solids

flash_point_f

Not applicable

flash_point_c

Not applicable

ppe

Eyeshields, Gloves, type N95 (US)



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Protocols

GenElute 哺乳动物基因组 DNA 纯化方案阐述了从多种哺乳动物来源中分离纯高分子量 DNA 的方法。

的GenElute™细菌基因组DNA试剂盒提供了一种从细菌中分离纯基因组DNA的简便方法。

The GenElute Mammalian Genomic DNA Purification Kit Protocol describes the isolation of pure, high molecular weight DNA from a variety of mammalian sources.

View All Protocols

Stephen AM and Phillips GO
Food Sci. Technol., 160 (2006)
Lukas Kain et al.
Journal of the mechanical behavior of biomedical materials, 85, 225-236 (2018-06-23)
Mechanical assessment of biological materials and tissue-engineered scaffolds is increasingly focusing at lower length scale levels. Amongst other techniques, atomic force microscopy (AFM) has gained popularity as an instrument to interrogate material properties, such as the indentation modulus, at the
Marijn Siemons et al.
Biomedical optics express, 11(2), 735-751 (2020-03-07)
Single-molecule localization microscopy (SMLM) enables fluorescent microscopy with nanometric resolution. While localizing molecules close to the coverslip is relatively straightforward using high numerical aperture (NA) oil immersion (OI) objectives, optical aberrations impede SMLM deeper in watery samples. Adaptive optics (AO)



Global Trade Item Number

SKUGTIN
A9539-100G04061835521609
A9539-50G04061835515769
A9539-10G04061835542741
A9539-250G04061835542758
A9539-25G04061835542765
A9539-500G04061835542772